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paired-end reads
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Merge two BAM files into one paired-end file
paired-end reads
bam file
6.5 years ago
ioannis.vardaxis
▴ 30
0
votes
1
reply
1.2k
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why merged paired end reads still have strand infomation?
dnaseq
rtracklayer
paired-end reads
6.9 years ago
zwfanwz678
• 0
1
vote
0
replies
1.2k
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generate table of counts with strand-specific paired-end RNA-seq data
summarizeoverlaps
paired-end reads
readGAlignmentPairs
7.1 years ago
teresati
▴ 10
0
votes
2
replies
1.1k
views
DiffBind PE data
diffbind
paired-end reads
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
rbronste
▴ 60
0
votes
0
replies
941
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
0
replies
1.1k
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Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
0
replies
947
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
7.4 years ago
guillaume.dachy
• 0
1
vote
2
replies
1.5k
views
Counting Distinct Mapped Reads in BAM File of Paired-end Sequencing
rsamtools
paired-end reads
countbam
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Dario Strbenac
★ 1.5k
8 results • Page
1 of 1
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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